PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_A847CD732.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 388aa    MW: 41456.4 Da    PI: 8.2903
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_A847CD732.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75e-35261192103
                            HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
           HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                            Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+k
  Traes_5BL_A847CD732.1  26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 104
                            9********************6667*****************************************999.........********** PP

                            XXXXXXXXXXXXXXX CS
           HSF_DNA-bind  89 gkkellekikrkkse 103
                            g+k+ll++i+r+k++
  Traes_5BL_A847CD732.1 105 GEKQLLCEIHRRKTS 119
                            ************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3615111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5822116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.17E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3026116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MERCGSWSES DATAQAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL CEIHRRKTSG  120
STTSSSPPPF FAPPHFPLFH PGVSVAHHHQ QFVGEDGPMA AHAGMGVPFM QPHWREQGAP  180
RLLALGGPAA PSPGADGNGR ASSAAVLMDE NERLRRSNTA LLQELSHMRK LYNDIIYFVQ  240
NHVRPVAPSP AAATFLQGLG NGMQPRKMPP ASTGAGNGLN TSGGSTTSSS SLTIADELSP  300
PPNHLSAEKS GGEAGSSSAA LSAPTKLFGV HLSAAPVGAG SKRPPSPEEE LPSTPPATKA  360
RLALESDDLS LSVAPPSQPY AASSPARS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221611820131Heat shock factor protein 1
5d5v_B3e-221611820131Heat shock factor protein 1
5d5v_D3e-221611820131Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560020.0AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576600.11e-177PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ67U941e-160HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLW5FG570.0W5FG57_WHEAT; Uncharacterized protein
STRINGMLOC_73356.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-77heat shock transcription factor B4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]